chore: bump the MSRV pin to Rust 1.99.0
User description
Closes #98
Summary
- Bump the minimum Rust version from 1.98.1 to 1.99.0 at every live pin:
Cargo.tomlrust-version,rust-toolchain.toml, every CItoolchain:value,.github/scripts/qualify-package.py,Dockerfile,.devin/blueprint.yaml, and the docs that name the pin (README.md,REVIEW.md,AGENTS.md,docs/ci.md,CLAUDE.md). - Rust 1.99 deprecates
AtomicU64::fetch_update. The test clock insrc/health/clock.rscallstry_updateso clippy-D warningsstays clean. Saturating advance behavior is unchanged. - Static libzmq from
zeromq-src0.2.6 mallocs yqueue chunks whilecommand_tis 64-byte aligned. Ubuntu 26.04's x86-64-v3 GCC copies that type withvmovdqaand SIGSEGVs..cargo/config.tomlpassesHAVE_POSIX_MEMALIGNand a 64-byte cache line as per-tripleCFLAGS/CXXFLAGSfor Linux and macOS. Thecccrate appends those to caller flags. Windows is omitted.cargo installloads that packaged config; an external crate that depends on this package must set the same defines itself. - Checkpoint fixture cleanup ignores only a missing directory. The usefulness report records that reproduction now uses Rust 1.99.0 while the committed results stay on the 1.98.1 run.
crates.io corpus-ipc 0.1.0 still declares Rust 1.98.1. corpus-ipc on main, axon-encoder, and synaptic-wiring are already 1.99.0 (Limen-Neural/corpus-ipc#57 is merged). This compiler accepts the published crate, so the build does not pass --ignore-rust-version.
Test plan
-
cargo fmt --checkon Rust 1.99.0 -
cargo clippy --locked --all-targets -- -D warnings -
cargo test --locked --lib checkpoint::(21 passed) -
cargo package --locked --listincludes.cargo/config.toml -
CC=gcc CXX=g++ cargo clippy --locked --all-targets --all-features -- -D warnings(previous head) -
CC=gcc CXX=g++ cargo test --locked --all-features(previous head: 182 unit tests passed, 1 ignored, plusconfig_startup,pub_lifecycle,thalamic_brainstem_smoke)


![View with [code]smith](https://pr-comments-assets.blacksmith.sh/codesmith/view-with-codesmith-dark-v3-3x.png)
![Autofix with [code]smith](https://pr-comments-assets.blacksmith.sh/codesmith/autofix-with-codesmith-dark-3x.png)
Need help on this PR? Tag @codesmith-bot with what you need.
Summary by cubic
Bumps the minimum supported Rust version from 1.98.1 to 1.99.0 at every pinned location: Cargo.toml, rust-toolchain.toml, CI workflows, the package qualification script, Dockerfile, .devin/blueprint.yaml, and the docs that name the pin. Building the crate, including from crates.io, now requires 1.99.0; a 1.98.x toolchain is rejected. Closes #98.
- Rust 1.99 deprecates
AtomicU64::fetch_update; the test clock insrc/health/clock.rsnow usestry_update, keeping clippy-D warningsclean with unchanged saturating behavior. - On Ubuntu 26.04, static libzmq from
zeromq-src0.2.6 misaligns 64-bytecommand_tslots under x86-64-v3 GCC;.cargo/config.tomland the qualification script setHAVE_POSIX_MEMALIGNwith a 64-byte cache line as per-triple compiler flags so callerCFLAGSstay intact, and the corpus-ipc CI cache key is bumped to v2. Only the named Unix triples get these defines; Windows is left alone, and external crates depending on this package must set the same defines themselves. - The corpus-ipc test binary is linked with the system linker, but CI still captures a gdb backtrace when it dies with signal 11. crates.io
corpus-ipc0.1.0 declares Rust 1.98.1, which this toolchain accepts, so builds do not need--ignore-rust-version. - The usefulness runner targets 1.99.0 while committed result files stay on the 1.98.1 run that produced them. Checkpoint tests clear stale fixture directories from a restored
target/cache.
CodeAnt-AI Description
Require Rust 1.99 and prevent ZeroMQ crashes in corpus-ipc builds
What Changed
- Building the daemon now requires Rust 1.99.0; Rust 1.98.x is rejected. Repository tools and build instructions use the same version.
corpus-ipcbuilds apply alignment settings on supported Unix targets, preventing a ZeroMQ crash with Ubuntu 26.04 and x86-64-v3 GCC. External projects that depend on the daemon must apply the documented settings themselves.
Impact
โ
Consistent Rust 1.99.0 build requirements
โ
Fewer corpus-ipc crashes on Ubuntu 26.04
โ
Clear setup instructions for external corpus-ipc builds
๐ก Usage Guide
Checking Your Pull Request
Every time you make a pull request, our system automatically looks through it. We check for security issues, mistakes in how you're setting up your infrastructure, and common code problems. We do this to make sure your changes are solid and won't cause any trouble later.
Talking to CodeAnt AI
Got a question or need a hand with something in your pull request? You can easily get in touch with CodeAnt AI right here. Just type the following in a comment on your pull request, and replace "Your question here" with whatever you want to ask:
@codeant-ai ask: Your question here
This lets you have a chat with CodeAnt AI about your pull request, making it easier to understand and improve your code.
Example
@codeant-ai ask: Can you suggest a safer alternative to storing this secret?
Preserve Org Learnings with CodeAnt
You can record team preferences so CodeAnt AI applies them in future reviews. Reply directly to the specific CodeAnt AI suggestion (in the same thread) and replace "Your feedback here" with your input:
@codeant-ai: Your feedback here
This helps CodeAnt AI learn and adapt to your team's coding style and standards.
Example
@codeant-ai: Do not flag unused imports.
Retrigger review
Ask CodeAnt AI to review the PR again, by typing:
@codeant-ai: review
Check Your Repository Health
To analyze the health of your code repository, visit our dashboard at https://app.codeant.ai. This tool helps you identify potential issues and areas for improvement in your codebase, ensuring your repository maintains high standards of code health.